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__author__ (in module torch_adata)
(in module torch_adata._core)
(in module torch_adata._core._AnnDataset)
(in module torch_adata._core._core_ancilliary)
(in module torch_adata._core._core_ancilliary._data_typing)
(in module torch_adata._core._core_ancilliary._fetch_data)
(in module torch_adata._core._core_ancilliary._group_and_pad_adata)
(in module torch_adata._core._core_ancilliary._identity_msg)
(in module torch_adata._core._core_ancilliary._one_hot_encode)
(in module torch_adata._core._core_ancilliary._register_init)
(in module torch_adata._core._core_ancilliary._return_data_on_axis)
(in module torch_adata._core._lightning)
(in module torch_adata._core._lightning._auto_parse_base_class)
(in module torch_adata._core._lightning._configure_adata)
(in module torch_adata._core._lightning._function_kwargs)
(in module torch_adata._core._lightning._lightning_anndata_module)
(in module torch_adata._core._lightning._train_val_split)
(in module torch_adata._tools)
(in module torch_adata._tools._anndataset_split)
(in module torch_adata._tools._base_lightning_data_module)
(in module torch_adata._tools._dummy_batch)
(in module torch_adata._tools._idx)
(in module torch_adata._tools._split)
__call__() (torch_adata._core._lightning._auto_parse_base_class.AutoParseBase method)
(torch_adata._core._lightning._configure_adata.AnnDataConfig method)
(torch_adata._core._lightning._function_kwargs.KwargExtractor method)
__collect__() (torch_adata._core._lightning._auto_parse_base_class.AutoParseBase method)
__doc__ (in module torch_adata)
(in module torch_adata._core)
(in module torch_adata._core._AnnDataset)
(in module torch_adata._core._core_ancilliary)
(in module torch_adata._core._core_ancilliary._data_typing)
(in module torch_adata._core._core_ancilliary._fetch_data)
(in module torch_adata._core._core_ancilliary._group_and_pad_adata)
(in module torch_adata._core._core_ancilliary._identity_msg)
(in module torch_adata._core._core_ancilliary._one_hot_encode)
(in module torch_adata._core._core_ancilliary._register_init)
(in module torch_adata._core._core_ancilliary._return_data_on_axis)
(in module torch_adata._core._lightning)
(in module torch_adata._core._lightning._auto_parse_base_class)
(in module torch_adata._core._lightning._configure_adata)
(in module torch_adata._core._lightning._function_kwargs)
(in module torch_adata._core._lightning._lightning_anndata_module)
(in module torch_adata._core._lightning._train_val_split)
(in module torch_adata._tools)
(in module torch_adata._tools._anndataset_split)
(in module torch_adata._tools._base_lightning_data_module)
(in module torch_adata._tools._dummy_batch)
(in module torch_adata._tools._idx)
(in module torch_adata._tools._split)
__email__ (in module torch_adata)
(in module torch_adata._core)
(in module torch_adata._core._AnnDataset)
(in module torch_adata._core._core_ancilliary)
(in module torch_adata._core._core_ancilliary._data_typing)
(in module torch_adata._core._core_ancilliary._fetch_data)
(in module torch_adata._core._core_ancilliary._group_and_pad_adata)
(in module torch_adata._core._core_ancilliary._identity_msg)
(in module torch_adata._core._core_ancilliary._one_hot_encode)
(in module torch_adata._core._core_ancilliary._register_init)
(in module torch_adata._core._core_ancilliary._return_data_on_axis)
(in module torch_adata._core._lightning)
(in module torch_adata._core._lightning._auto_parse_base_class)
(in module torch_adata._core._lightning._configure_adata)
(in module torch_adata._core._lightning._function_kwargs)
(in module torch_adata._core._lightning._lightning_anndata_module)
(in module torch_adata._core._lightning._train_val_split)
(in module torch_adata._tools)
(in module torch_adata._tools._anndataset_split)
(in module torch_adata._tools._base_lightning_data_module)
(in module torch_adata._tools._dummy_batch)
(in module torch_adata._tools._idx)
(in module torch_adata._tools._split)
__getitem__() (torch_adata._core._AnnDataset.AnnDataset method)
(torch_adata.AnnDataset method)
__hide__() (torch_adata._core._lightning._auto_parse_base_class.AutoParseBase method)
__init_kwargs__() (torch_adata._core._lightning._auto_parse_base_class.AutoParseBase method)
__len__() (torch_adata._core._AnnDataset.AnnDataset method)
(torch_adata.AnnDataset method)
__module_name__ (in module torch_adata)
(in module torch_adata._core)
(in module torch_adata._core._AnnDataset)
(in module torch_adata._core._core_ancilliary)
(in module torch_adata._core._core_ancilliary._data_typing)
(in module torch_adata._core._core_ancilliary._fetch_data)
(in module torch_adata._core._core_ancilliary._group_and_pad_adata)
(in module torch_adata._core._core_ancilliary._identity_msg)
(in module torch_adata._core._core_ancilliary._one_hot_encode)
(in module torch_adata._core._core_ancilliary._register_init)
(in module torch_adata._core._core_ancilliary._return_data_on_axis)
(in module torch_adata._core._lightning)
(in module torch_adata._core._lightning._auto_parse_base_class)
(in module torch_adata._core._lightning._configure_adata)
(in module torch_adata._core._lightning._function_kwargs)
(in module torch_adata._core._lightning._lightning_anndata_module)
(in module torch_adata._core._lightning._train_val_split)
(in module torch_adata._tools)
(in module torch_adata._tools._anndataset_split)
(in module torch_adata._tools._base_lightning_data_module)
(in module torch_adata._tools._dummy_batch)
(in module torch_adata._tools._idx)
(in module torch_adata._tools._split)
__parse__() (torch_adata._core._lightning._auto_parse_base_class.AutoParseBase method)
(torch_adata._core._lightning._function_kwargs.KwargExtractor method)
(torch_adata._tools._anndataset_split.AnnDatasetSplit method)
(torch_adata._tools._base_lightning_data_module.BaseLightningDataModule method)
(torch_adata._tools.AnnDatasetSplit method)
(torch_adata._tools.BaseLightningDataModule method)
__repr__() (torch_adata._core._AnnDataset.AnnDataset method)
(torch_adata._core._lightning._lightning_anndata_module.LightningAnnDataModule method)
(torch_adata._core.LightningAnnDataModule method)
(torch_adata.AnnDataset method)
(torch_adata.LightningAnnDataModule method)
__version__ (in module torch_adata)
(in module torch_adata._core)
(in module torch_adata._core._core_ancilliary)
(in module torch_adata._core._lightning)
(in module torch_adata._tools)
_all_attr_msg() (in module torch_adata._core._core_ancilliary._identity_msg)
_attr_msg() (in module torch_adata._core._core_ancilliary._identity_msg)
_call_params (torch_adata._core._lightning._auto_parse_base_class.AutoParseBase property)
_check_literal_kwargs() (torch_adata._core._lightning._function_kwargs.KwargExtractor method)
_collect_literal_kwargs() (torch_adata._core._lightning._auto_parse_base_class.AutoParseBase method)
_collected_params (torch_adata._core._lightning._auto_parse_base_class.AutoParseBase property)
_configure_adata() (torch_adata._core._lightning._lightning_anndata_module.LightningAnnDataModule method)
(torch_adata._core.LightningAnnDataModule method)
(torch_adata.LightningAnnDataModule method)
_configure_training_subset() (torch_adata._core._lightning._train_val_split.TrainValSplit method)
_extract_func_params() (in module torch_adata._core._lightning._function_kwargs)
(torch_adata._core._lightning._function_kwargs.KwargExtractor method)
_format_adata_obs_index() (torch_adata._core._lightning._lightning_anndata_module.LightningAnnDataModule method)
(torch_adata._core.LightningAnnDataModule method)
(torch_adata.LightningAnnDataModule method)
_groupby_msg() (in module torch_adata._core._core_ancilliary._identity_msg)
_header_msg() (in module torch_adata._core._core_ancilliary._identity_msg)
_init_params (torch_adata._core._lightning._auto_parse_base_class.AutoParseBase property)
_inspect() (torch_adata._core._lightning._auto_parse_base_class.AutoParseBase method)
_pad_indices() (in module torch_adata._core._core_ancilliary._group_and_pad_adata)
_parse_params (torch_adata._core._lightning._auto_parse_base_class.AutoParseBase property)
_print_batch_details() (in module torch_adata._tools._dummy_batch)
_return_loader() (torch_adata._core._lightning._lightning_anndata_module.LightningAnnDataModule method)
(torch_adata._core.LightningAnnDataModule method)
(torch_adata.LightningAnnDataModule method)
_sample_indices_for_padding() (in module torch_adata._core._core_ancilliary._group_and_pad_adata)
_set_new_idx() (torch_adata._core._lightning._train_val_split.TrainValSplit method)
_sum_norm() (torch_adata._core._lightning._train_val_split.SplitSize method)
_train_test_obs_keys() (torch_adata._tools._anndataset_split.AnnDatasetSplit method)
(torch_adata._tools.AnnDatasetSplit method)
_X_msg() (in module torch_adata._core._core_ancilliary._identity_msg)
A
adata (torch_adata._core._lightning._lightning_anndata_module.LightningAnnDataModule property)
(torch_adata._core.LightningAnnDataModule property)
(torch_adata.LightningAnnDataModule property)
adata_is_AnnData (torch_adata._core._lightning._configure_adata.AnnDataConfig property)
allocate_validation() (torch_adata._core._lightning._train_val_split.TrainValSplit method)
(torch_adata._tools._anndataset_split.AnnDatasetSplit method)
(torch_adata._tools.AnnDatasetSplit method)
AnnDataConfig (class in torch_adata._core._lightning._configure_adata)
AnnDataset (class in torch_adata)
(class in torch_adata._core._AnnDataset)
AnnDatasetKWARGS (torch_adata._core._lightning._lightning_anndata_module.LightningAnnDataModule property)
(torch_adata._core.LightningAnnDataModule property)
(torch_adata.LightningAnnDataModule property)
AnnDatasetSplit (class in torch_adata._tools)
(class in torch_adata._tools._anndataset_split)
annotate_attr_size() (in module torch_adata._core._core_ancilliary._identity_msg)
as_list() (in module torch_adata._core._core_ancilliary)
(in module torch_adata._core._core_ancilliary._data_typing)
AutoParseBase (class in torch_adata._core._lightning._auto_parse_base_class)
B
BaseLightningDataModule (class in torch_adata._tools)
(class in torch_adata._tools._base_lightning_data_module)
C
calculate_split_lengths() (in module torch_adata._tools._split)
cell_idx (torch_adata._core._lightning._lightning_anndata_module.LightningAnnDataModule property)
(torch_adata._core.LightningAnnDataModule property)
(torch_adata.LightningAnnDataModule property)
compile_attributes() (in module torch_adata._core._core_ancilliary._register_init)
configure_adata() (in module torch_adata._core._lightning._configure_adata)
configure_train_val_split() (torch_adata._core._lightning._lightning_anndata_module.LightningAnnDataModule method)
(torch_adata._core.LightningAnnDataModule method)
(torch_adata.LightningAnnDataModule method)
configure_validation() (torch_adata._core._lightning._train_val_split.TrainValSplit method)
count_attrs() (in module torch_adata._core._core_ancilliary._register_init)
D
data_keys (torch_adata._core._lightning._lightning_anndata_module.LightningAnnDataModule property)
(torch_adata._core.LightningAnnDataModule property)
(torch_adata.LightningAnnDataModule property)
dummy_batch() (in module torch_adata._tools)
(in module torch_adata._tools._dummy_batch)
E
extract_func_kwargs() (in module torch_adata._core._lightning._function_kwargs)
(in module torch_adata._tools._anndataset_split)
F
Fetch (class in torch_adata._core._core_ancilliary)
(class in torch_adata._core._core_ancilliary._fetch_data)
fetch_from_grouped_adata() (in module torch_adata._core._core_ancilliary._fetch_data)
fetch_from_multiple_obs_keys() (in module torch_adata._core._core_ancilliary._fetch_data)
fetch_from_obs() (in module torch_adata._core._core_ancilliary._fetch_data)
fetch_X() (in module torch_adata._core._core_ancilliary._fetch_data)
format_obs_index() (torch_adata._core._lightning._configure_adata.AnnDataConfig method)
func_params (torch_adata._core._lightning._function_kwargs.KwargExtractor property)
func_params() (in module torch_adata._tools._anndataset_split)
function_kwargs() (in module torch_adata._core._lightning._function_kwargs)
G
group_and_pad_adata() (in module torch_adata._core._core_ancilliary)
(in module torch_adata._core._core_ancilliary._group_and_pad_adata)
grouped_adata() (torch_adata._core._core_ancilliary._fetch_data.Fetch method)
(torch_adata._core._core_ancilliary.Fetch method)
H
h5ad_path_ends_properly (torch_adata._core._lightning._configure_adata.AnnDataConfig property)
h5ad_path_exists (torch_adata._core._lightning._configure_adata.AnnDataConfig property)
h5ad_path_is_str (torch_adata._core._lightning._configure_adata.AnnDataConfig property)
has_train_not_val (torch_adata._core._lightning._train_val_split.TrainValSplit property)
I
identity_msg() (in module torch_adata._core._core_ancilliary)
(in module torch_adata._core._core_ancilliary._identity_msg)
idx() (in module torch_adata._tools)
(in module torch_adata._tools._idx)
init_train_adata (torch_adata._core._lightning._lightning_anndata_module.LightningAnnDataModule property)
(torch_adata._core.LightningAnnDataModule property)
(torch_adata.LightningAnnDataModule property)
is_numpy_array() (in module torch_adata._core._core_ancilliary)
(in module torch_adata._core._core_ancilliary._data_typing)
is_pandas_categorical() (in module torch_adata._core._core_ancilliary)
(in module torch_adata._core._core_ancilliary._data_typing)
K
KwargExtractor (class in torch_adata._core._lightning._function_kwargs)
L
LightningAnnDataModule (class in torch_adata)
(class in torch_adata._core)
(class in torch_adata._core._lightning._lightning_anndata_module)
M
max_len() (in module torch_adata._core._core_ancilliary._group_and_pad_adata)
module
torch_adata
torch_adata._core
torch_adata._core._AnnDataset
torch_adata._core._core_ancilliary
torch_adata._core._core_ancilliary._data_typing
torch_adata._core._core_ancilliary._fetch_data
torch_adata._core._core_ancilliary._group_and_pad_adata
torch_adata._core._core_ancilliary._identity_msg
torch_adata._core._core_ancilliary._one_hot_encode
torch_adata._core._core_ancilliary._register_init
torch_adata._core._core_ancilliary._return_data_on_axis
torch_adata._core._lightning
torch_adata._core._lightning._auto_parse_base_class
torch_adata._core._lightning._configure_adata
torch_adata._core._lightning._function_kwargs
torch_adata._core._lightning._lightning_anndata_module
torch_adata._core._lightning._train_val_split
torch_adata._tools
torch_adata._tools._anndataset_split
torch_adata._tools._base_lightning_data_module
torch_adata._tools._dummy_batch
torch_adata._tools._idx
torch_adata._tools._split
multi_obs() (torch_adata._core._core_ancilliary._fetch_data.Fetch method)
(torch_adata._core._core_ancilliary.Fetch method)
N
n_cells (torch_adata._core._lightning._lightning_anndata_module.LightningAnnDataModule property)
(torch_adata._core._lightning._train_val_split.TrainValSplit property)
(torch_adata._core.LightningAnnDataModule property)
(torch_adata.LightningAnnDataModule property)
n_dims (torch_adata._core._AnnDataset.AnnDataset property)
(torch_adata._core._lightning._lightning_anndata_module.LightningAnnDataModule property)
(torch_adata._core.LightningAnnDataModule property)
(torch_adata.AnnDataset property)
(torch_adata.LightningAnnDataModule property)
n_features (torch_adata._core._lightning._lightning_anndata_module.LightningAnnDataModule property)
(torch_adata._core.LightningAnnDataModule property)
(torch_adata.LightningAnnDataModule property)
n_groups (torch_adata._core._lightning._train_val_split.TrainValSplit property)
NoneType (in module torch_adata._core._core_ancilliary._group_and_pad_adata)
O
obs() (torch_adata._core._core_ancilliary._fetch_data.Fetch method)
(torch_adata._core._core_ancilliary.Fetch method)
obs_cols (torch_adata._core._lightning._train_val_split.TrainValSplit property)
obs_df (torch_adata._core._lightning._train_val_split.TrainValSplit property)
on_test_train() (torch_adata._tools._anndataset_split.AnnDatasetSplit method)
(torch_adata._tools.AnnDatasetSplit method)
one_hot_encode() (in module torch_adata._core._core_ancilliary)
(in module torch_adata._core._core_ancilliary._one_hot_encode)
P
predict_adata (torch_adata._core._lightning._lightning_anndata_module.LightningAnnDataModule property)
(torch_adata._core.LightningAnnDataModule property)
(torch_adata.LightningAnnDataModule property)
predict_dataloader() (torch_adata._core._lightning._lightning_anndata_module.LightningAnnDataModule method)
(torch_adata._core.LightningAnnDataModule method)
(torch_adata._tools._base_lightning_data_module.BaseLightningDataModule method)
(torch_adata._tools.BaseLightningDataModule method)
(torch_adata.LightningAnnDataModule method)
predict_dataset (torch_adata._core._lightning._lightning_anndata_module.LightningAnnDataModule property)
(torch_adata._core.LightningAnnDataModule property)
(torch_adata.LightningAnnDataModule property)
prepare_data() (torch_adata._core._lightning._lightning_anndata_module.LightningAnnDataModule method)
(torch_adata._core.LightningAnnDataModule method)
(torch_adata.LightningAnnDataModule method)
properly_formatted_index (torch_adata._core._lightning._configure_adata.AnnDataConfig property)
(torch_adata._core._lightning._lightning_anndata_module.LightningAnnDataModule property)
(torch_adata._core.LightningAnnDataModule property)
(torch_adata.LightningAnnDataModule property)
proportioned() (torch_adata._core._lightning._train_val_split.SplitSize method)
proportioned_group_sizes() (in module torch_adata._tools._split)
proportioned_split (torch_adata._core._lightning._train_val_split.TrainValSplit property)
Q
query() (torch_adata._core._lightning._function_kwargs.KwargExtractor method)
R
register_args() (in module torch_adata._core._core_ancilliary._register_init)
register_attr_names() (in module torch_adata._core._core_ancilliary._register_init)
register_init() (in module torch_adata._core._core_ancilliary)
(in module torch_adata._core._core_ancilliary._register_init)
register_one_hot_encode() (in module torch_adata._core._core_ancilliary._register_init)
return_data_on_axis() (in module torch_adata._core._core_ancilliary)
(in module torch_adata._core._core_ancilliary._return_data_on_axis)
rm_space() (in module torch_adata._core._core_ancilliary._register_init)
S
setup() (torch_adata._core._lightning._lightning_anndata_module.LightningAnnDataModule method)
(torch_adata._core.LightningAnnDataModule method)
(torch_adata.LightningAnnDataModule method)
split (torch_adata._core._lightning._train_val_split.TrainValSplit property)
split() (in module torch_adata._tools)
(in module torch_adata._tools._split)
SplitSize (class in torch_adata._core._lightning._train_val_split)
subset_adata() (torch_adata._core._lightning._lightning_anndata_module.LightningAnnDataModule method)
(torch_adata._core.LightningAnnDataModule method)
(torch_adata.LightningAnnDataModule method)
T
tensorize() (in module torch_adata._core._core_ancilliary)
(in module torch_adata._core._core_ancilliary._data_typing)
test_adata (torch_adata._core._lightning._lightning_anndata_module.LightningAnnDataModule property)
(torch_adata._core.LightningAnnDataModule property)
(torch_adata.LightningAnnDataModule property)
test_dataloader() (torch_adata._core._lightning._lightning_anndata_module.LightningAnnDataModule method)
(torch_adata._core.LightningAnnDataModule method)
(torch_adata._tools._base_lightning_data_module.BaseLightningDataModule method)
(torch_adata._tools.BaseLightningDataModule method)
(torch_adata.LightningAnnDataModule method)
test_dataset (torch_adata._core._lightning._lightning_anndata_module.LightningAnnDataModule property)
(torch_adata._core.LightningAnnDataModule property)
(torch_adata.LightningAnnDataModule property)
to_dataset() (torch_adata._core._lightning._lightning_anndata_module.LightningAnnDataModule method)
(torch_adata._core.LightningAnnDataModule method)
(torch_adata._tools._anndataset_split.AnnDatasetSplit method)
(torch_adata._tools.AnnDatasetSplit method)
(torch_adata.LightningAnnDataModule method)
to_np_array() (in module torch_adata._core._core_ancilliary)
(in module torch_adata._core._core_ancilliary._data_typing)
torch_adata
module
torch_adata._core
module
torch_adata._core._AnnDataset
module
torch_adata._core._core_ancilliary
module
torch_adata._core._core_ancilliary._data_typing
module
torch_adata._core._core_ancilliary._fetch_data
module
torch_adata._core._core_ancilliary._group_and_pad_adata
module
torch_adata._core._core_ancilliary._identity_msg
module
torch_adata._core._core_ancilliary._one_hot_encode
module
torch_adata._core._core_ancilliary._register_init
module
torch_adata._core._core_ancilliary._return_data_on_axis
module
torch_adata._core._lightning
module
torch_adata._core._lightning._auto_parse_base_class
module
torch_adata._core._lightning._configure_adata
module
torch_adata._core._lightning._function_kwargs
module
torch_adata._core._lightning._lightning_anndata_module
module
torch_adata._core._lightning._train_val_split
module
torch_adata._tools
module
torch_adata._tools._anndataset_split
module
torch_adata._tools._base_lightning_data_module
module
torch_adata._tools._dummy_batch
module
torch_adata._tools._idx
module
torch_adata._tools._split
module
train_adata (torch_adata._core._lightning._lightning_anndata_module.LightningAnnDataModule property)
(torch_adata._core.LightningAnnDataModule property)
(torch_adata.LightningAnnDataModule property)
train_cells (torch_adata._core._lightning._train_val_split.TrainValSplit property)
train_dataloader() (torch_adata._core._lightning._lightning_anndata_module.LightningAnnDataModule method)
(torch_adata._core.LightningAnnDataModule method)
(torch_adata._tools._base_lightning_data_module.BaseLightningDataModule method)
(torch_adata._tools.BaseLightningDataModule method)
(torch_adata.LightningAnnDataModule method)
train_dataset (torch_adata._core._lightning._lightning_anndata_module.LightningAnnDataModule property)
(torch_adata._core.LightningAnnDataModule property)
(torch_adata.LightningAnnDataModule property)
TrainValSplit (class in torch_adata._core._lightning._train_val_split)
U
uniform_group_sizes() (in module torch_adata._tools._split)
uniform_split (torch_adata._core._lightning._train_val_split.TrainValSplit property)
uniformly() (torch_adata._core._lightning._train_val_split.SplitSize method)
update_attrs() (torch_adata._core._core_ancilliary._fetch_data.Fetch method)
(torch_adata._core._core_ancilliary.Fetch method)
update_aux_attrs() (torch_adata._core._core_ancilliary._fetch_data.Fetch method)
(torch_adata._core._core_ancilliary.Fetch method)
update_obs_attrs() (torch_adata._core._core_ancilliary._fetch_data.Fetch method)
(torch_adata._core._core_ancilliary.Fetch method)
V
val_adata (torch_adata._core._lightning._lightning_anndata_module.LightningAnnDataModule property)
(torch_adata._core.LightningAnnDataModule property)
(torch_adata.LightningAnnDataModule property)
val_dataloader() (torch_adata._core._lightning._lightning_anndata_module.LightningAnnDataModule method)
(torch_adata._core.LightningAnnDataModule method)
(torch_adata._tools._base_lightning_data_module.BaseLightningDataModule method)
(torch_adata._tools.BaseLightningDataModule method)
(torch_adata.LightningAnnDataModule method)
val_dataset (torch_adata._core._lightning._lightning_anndata_module.LightningAnnDataModule property)
(torch_adata._core.LightningAnnDataModule property)
(torch_adata.LightningAnnDataModule property)
X
X() (torch_adata._core._core_ancilliary._fetch_data.Fetch method)
(torch_adata._core._core_ancilliary.Fetch method)