torch_adata._demo

Submodules

• torch_adata._demo._demo_data
• torch_adata._demo._larry
• torch_adata._demo._pbmc_3k
• torch_adata._demo._plot_umap

Package Contents

Classes

PlotUMAP
PBMC3k
LARRY
DemoData

class torch_adata._demo.PlotUMAP(adata, title='10x PBMCs (~3k cells)', wspace=0.1, rm_ticks=True, spines_to_delete=['top', 'bottom', 'right', 'left'], labels=['UMAP-1', 'UMAP-2'], use_key='X_umap', cmap_key='cmap', alpha=0.65)

Bases: torch_adata._utils.ABCParse

property CMAP

__config__()

_plot_grouped()

_format()

__call__(groupby=None, plot_behind=['Undifferentiated'])

class torch_adata._demo.PBMC3k(silent=False)

Bases: torch_adata._utils.ABCParse

property adata

_configure()

plot()

class torch_adata._demo.LARRY(filename='adata.LARRY.h5ad', data_dir='data', silent=False)

Bases: torch_adata._utils.ABCParse

property local_path

property adata

_HTTP_ADDRESS = https://figshare.com/ndownloader/files/38171943

_config(kwargs)

_download()

plot()

class torch_adata._demo.DemoData

Bases: torch_adata._utils.ABCParse

property PBMC3k

property LARRY